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Bug 709 - Fiji macro editor not available
Fiji macro editor not available
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-03-05 12:51 CST by Jan Brocher
Modified: 2014-03-05 16:05 CST
3 users (show)

See Also:

Attachments
What the Script Editor looks like (117.67 KB, image/png)
2014-03-05 13:43 CST, Curtis Rueden
What the vanilla ImageJ text editor looks like (86.70 KB, image/png)
2014-03-05 13:44 CST, Curtis Rueden

Description Jan Brocher 2014-03-05 12:51:59 CST 
after the newest update under Fiji, the standard macro/plugin editor does not open but instead the standard (old) ImageJ editor pops up. The same happens after pressing create after recording steps.

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: D:\Fiji\Fiji.app/java/win64/jdk1.6.0_24//jre
  ij.dir => D:\Fiji\Fiji.app

Information about the version of each plugin:

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Comment 1 Curtis Rueden 2014-03-05 13:43:17 CST 
Created attachment 132
What the Script Editor looks like
Comment 2 Curtis Rueden 2014-03-05 13:44:05 CST 
Created attachment 133
What the vanilla ImageJ text editor looks like
Comment 3 Curtis Rueden 2014-03-05 13:44:46 CST 
First of all, which update sites do you have enabled? Note well that turning on anything else may result in different behavior. (Unlikely in this case, but you never know...)

Anyway, I cannot reproduce the problem as described with a fully updated Fiji (only ImageJ and Fiji update sites ticked) on my system.

However, I do notice the inverse problem: File > New > Text Window no longer brings up the vanilla ImageJ text editor like it used to, but instead brings up the Script Editor. It is occasionally useful to have access to the vanilla ImageJ text editor.

To be certain we are talking about the same thing: I attached two images: one showing what the Script Editor looks like, and another for the vanilla ImageJ text editor.
Comment 4 Johannes Schindelin 2014-03-05 15:29:51 CST 
For some reason your installation lacks the ij1-patcher.jar. Please go to Help>Update Fiji, click on "Advanced mode", select the "View all files" mode, type "ij1-" in your search box and mark it for update. Then simply click "Apply changes", restart Fiji and it should work again.

Due to a mistake of yours truly, ij1-patcher was not correctly added as a dependency of ij-legacy.jar (which was updated correctly). I will try to figure out what went wrong and fix that bug, but I might only get around to do it in a week or so.
Comment 5 Johannes Schindelin 2014-03-05 16:05:03 CST 
On Wed, 5 Mar 2014, BioVoxxel wrote:
> Hi Johannes,
> Thanks a lot, your suggestion did the job!
> It might be that I messed up this dependency by myself during one of the
> uploads I did to the update site one of these days.
> So don't worry, I think it was rather me than an actual problem in Fiji.
> 
> Thanks again,
> Jan

I am actually quite sure that it is a combination of the updater not marking new files for update by mistake, and the command-line updater failing to identify new dependencies when uploading new files.

In any case, I will close the bug because it works for you, and will work on the updater issues as time allows.