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Bug 738 - Analyze Particles - Large File Bug
Analyze Particles - Large File Bug
Status: NEW
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-05-02 00:59 CDT by Stephe Cody
Modified: 2014-05-02 00:59 CDT
1 user (show)

See Also:
Description Stephe Cody 2014-05-02 00:59:44 CDT 
We wish to count the number of cells in a large tif image. We find the Analyze Particlles does not succeed on a PC with 24 Gig Ram or a Super computer. However, if we crop the image to half the size it works. The image to my mind does not seem extrodinarilly large. 11.720 x 16,460 Pixels 8 bit.

You may download a full sized tif here.
https://www.dropbox.com/s/uojwa3m0ncc9fpo/FullSize.tif

A cropped image here:
https://www.dropbox.com/s/8lx10q8ce7fyd5j/Cropped.tif

For consistency I'll include a macro for thresholding and the particle analysis:
https://www.dropbox.com/s/grjrbrikq5iazgx/Scody_threshold_tmp1.ijm

Thanks
Steve
Stephen.cody@monash.edu

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Fiji\fiji-win64\Fiji.app/java/win64/jdk1.6.0_24//jre
  ij.dir => C:\Fiji\fiji-win64\Fiji.app

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