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Bug 755 - Cannot get Simple Neurite Tracer to Work
Cannot get Simple Neurite Tracer to Work
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-06-02 09:56 CDT by Aaron
Modified: 2014-06-05 17:03 CDT
2 users (show)

See Also:

Description Aaron 2014-06-02 09:56:48 CDT
(Fiji Is Just) ImageJ 1.49b; Java 1.6.0_65 [64-bit]; Mac OS X 10.9.3; 153MB of 1711MB (8%)
 
java.lang.SecurityException: sealing violation: package javax.media.j3d is sealed
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:234)
	at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
	at java.lang.ClassLoader.defineClass1(Native Method)
	at java.lang.ClassLoader.defineClassCond(ClassLoader.java:637)
	at java.lang.ClassLoader.defineClass(ClassLoader.java:621)
	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
	at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
	at ij3d.ImageWindow3D.<init>(ImageWindow3D.java:64)
	at ij3d.Image3DUniverse.show(Image3DUniverse.java:212)
	at tracing.Simple_Neurite_Tracer.run(Simple_Neurite_Tracer.java:442)
	at ij.IJ.runUserPlugIn(IJ.java:201)
	at ij.IJ.runPlugIn(IJ.java:165)
	at ij.Executer.runCommand(Executer.java:131)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:695)

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.9.3
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-11M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140530133818)
Fiji: http://fiji.sc/update/ (last check:20140528074242)
Comment 1 Johannes Schindelin 2014-06-05 12:15:53 CDT
It seems you have trouble with Java3D rather than the Simple Neurite Tracer. Have you tried running the 3D Viewer or Test Java3D?
Comment 2 Aaron 2014-06-05 14:13:04 CDT
It was Java. When I went into 3D viewer, it recommended an update. Updated Java and it worked. Thanks!
Comment 3 Johannes Schindelin 2014-06-05 17:03:26 CDT
Great! I'll close the ticket, then.