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Bug 807 - Updater or update site problems
Updater or update site problems
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-06-20 07:12 CDT by Graeme Ball
Modified: 2014-06-20 10:30 CDT
3 users (show)

See Also:
Description Graeme Ball 2014-06-20 07:12:53 CDT 
The Fiji updater (Help->Update Fiji) seems to hang, but after a l ... o ... n ... g wait, reports "Could not update from site blah" where blah is 3D ImageJ Suite, BioVoxxel and Cookbook; all of which are at sites.imagej.net according to "Show Details".

Browser reports "could not connetct to" http://sites.imagej.net as well (can't remember if that's normal). 

Hopefully it's as simple as rebooting a server ;-)

Graeme

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.9.3
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-11M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140620030617)
Fiji: http://fiji.sc/update/ (last check:20140618210039)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20140604070506)
BioVoxxel: http://sites.imagej.net/BioVoxxel/ (last check:20140519192603)
Cookbook: http://sites.imagej.net/Cookbook/ (last check:20131220231857)

Files not up-to-date:
  5d5835b0 (MODIFIED) 20140609102817 Contents/Info.plist
  3814d5a6 (LOCAL_ONLY) 20140604155718 jars/bij.jar
  f96af9c5 (LOCAL_ONLY) 20140528155339 macros/BatchMacro.ijm
  8de72b0a (LOCAL_ONLY) 20140519122352 macros/DisplayRangeMacros.txt
  0d6e4e4a (LOCAL_ONLY) 20140519123218 macros/Gamma.txt
  c6a2a812 (LOCAL_ONLY) 20140528012911 macros/StartupMacros.txt
  51b2e57a (LOCAL_ONLY) 20140604155715 macros/toolsets/BioVoxxel_Toolbox.ijm
  545b95ef (LOCAL_ONLY) 20140604155715 macros/toolsets/Nearest_Neighbor_Indicator.ijm
  02a52ea2 (LOCAL_ONLY) 20140604155714 plugins/ActionBar/BioVoxxel_bar.txt
  0a5c1981 (LOCAL_ONLY) 20140509155303 plugins/Color_Profiler.jar
  37955112 (LOCAL_ONLY) 20140529103845 plugins/FRAP_Analysis.class
  0fb65ed4 (LOCAL_ONLY) 20140604155716 plugins/Filters/Adaptive_Filter.class
  7f2acd01 (LOCAL_ONLY) 20140604155716 plugins/Filters/Enhance_True_Color_Contrast.class
  448b2287 (LOCAL_ONLY) 20140604155716 plugins/Filters/Gaussian_Weighted_Median.class
  2c9ade75 (LOCAL_ONLY) 20140604155716 plugins/Filters/Limited_Mean.class
  1656d24d (LOCAL_ONLY) 20140604155716 plugins/Filters/Pseudo_flat_field_correction.class
  2099d7a7 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/LoG3D.class
  964e5dbe (LOCAL_ONLY) 20060217161502 plugins/LoG3D/LoG_3D.class
  1fe5cd25 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/Access.class
  7cdd61d3 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/Buffer.class
  f1da288c (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/Builder.class
  9052d070 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ByteAccess.class
  d122c864 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ByteBuffer.class
  dd47fc25 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/BytePointwise.class
  140ed17c (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ByteProcess.class
  31c0d21f (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ByteSet.class
  11d4a88b (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/Convolver.class
  03cca71a (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/Display.class
  4d942e3d (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/DoubleAccess.class
  ff3fd92c (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/DoubleBuffer.class
  d59278f6 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/DoublePointwise.class
  23badf1a (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/DoubleProcess.class
  b75069ca (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/DoubleSet.class
  60c4dbb3 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/FMath.class
  856f718c (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/FloatAccess.class
  1a374b16 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/FloatBuffer.class
  95dce0f9 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/FloatPointwise.class
  9b8a6a1c (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/FloatProcess.class
  bbdd7dd7 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/FloatSet.class
  159fd13f (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ImageAccess.class
  bb737658 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ImageWare.class
  45772d84 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/Pointwise.class
  7de57b9b (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/Process.class
  a4464928 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ShortAccess.class
  2ef85e24 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ShortBuffer.class
  42737fb1 (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ShortPointwise.class
  3829fc6c (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ShortProcess.class
  b1207f2a (LOCAL_ONLY) 20060217161502 plugins/LoG3D/imageware/ShortSet.class
  27dcbe2a (LOCAL_ONLY) 20140519122235 plugins/Macros/DisplayRangeMacros.txt
  ec17890b (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/JHotDraw.jar
  91ece67d (LOCAL_ONLY) 20131128104658 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/JWlz.jar
  36cb5c0a (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/TableLayout.jar
  ff61a1b4 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ai_path.jar
  c3a86bd0 (LOCAL_ONLY) 20131104155522 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/assumeng.jar
  364315a9 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/axis.jar
  0af1624e (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/backport-util-concurrent.jar
  c9d60a9e (LOCAL_ONLY) 20140224162818 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/blitz.jar
  189f61fa (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/bufr.jar
  19c30fe9 (LOCAL_ONLY) 20140224162650 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/common.jar
  940245e0 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/commons-codec.jar
  64d8a654 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/commons-collections.jar
  86ab9004 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/commons-digester.jar
  9e9eb622 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/commons-discovery.jar
  c62bea1b (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/commons-httpclient.jar
  d59d3e4c (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/commons-io.jar
  f6139801 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/commons-lang.jar
  7018824c (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/commons-logging.jar
  60a83b54 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/commons-validator.jar
  abf211c5 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ehcache-core.jar
  991b5e8a (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/gicentreUtils.jar
  dbcde867 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/gluegen-rt.jar
  e33cecc2 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/grib.jar
  ac0dfbec (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/guava-jdk5.jar
  85c28658 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/hibernate-jpa-2.0-api.jar
  1911c9e1 (LOCAL_ONLY) 20131120130114 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ice-glacier2.jar
  b1d709fb (LOCAL_ONLY) 20131120130114 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ice-grid.jar
  c49b8fa2 (LOCAL_ONLY) 20131120130114 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ice-storm.jar
  53aa5393 (LOCAL_ONLY) 20131120130114 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ice.jar
  6e7614ee (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ij.jar
  6ce638fb (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ini4j.jar
  f1b65457 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/java-getopt.jar
  c827227f (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/java-image-scaling.jar
  e72f9b2b (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/jaxrpc.jar
  4156c7b5 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/jcommon.jar
  c57f20b0 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/jfreechart.jar
  df7a0b63 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/jna.jar
  4c09d41c (LOCAL_ONLY) 20131104155522 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/joda-time.jar
  9a9b947a (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/jogl.jar
  d2af3ac9 (LOCAL_ONLY) 20131104155522 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/kryo.jar
  c6b60cce (LOCAL_ONLY) 20140224162614 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/lwf-stubs.jar
  91c79a92 (LOCAL_ONLY) 20140224162648 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/model-psql.jar
  a127d67c (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/nanoxml.jar
  e1a35a80 (LOCAL_ONLY) 20131104155522 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/native-lib-loader.jar
  a51a31db (LOCAL_ONLY) 20131128104658 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/netcdf.jar
  e665d66a (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ols-client.jar
  18382f06 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/ome-java.jar
  7af6ddeb (LOCAL_ONLY) 20131104155522 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/perf4j.jar
  6340be70 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/physics.jar
  b3056152 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/platform.jar
  4ef2cfd3 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/poi.jar
  af4b3176 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/processing-controlP5.jar
  1cb045e1 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/processing-core.jar
  2e6cf711 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/saaj.jar
  eedc0cd9 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/serializer.jar
  572a727b (LOCAL_ONLY) 20131104155522 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/slf4j-api.jar
  f4d01930 (LOCAL_ONLY) 20140224162610 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/specification.jar
  ba32bfdf (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/swingx.jar
  7c4005e7 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/wsdl4j.jar
  c8694e76 (LOCAL_ONLY) 20131104155444 plugins/OMERO.insight-ij-5.0.0-ice35-b19/libs/xalan.jar
  56a05ff0 (LOCAL_ONLY) 20140224163050 plugins/OMERO.insight-ij-5.0.0-ice35-b19/omero_ij.jar
  bbc6c98f (LOCAL_ONLY) 20140620012833 plugins/SIMcheck_.jar
  e9f8f392 (LOCAL_ONLY) 20140604155718 plugins/cookbook_.jar
  71331805 (LOCAL_ONLY) 20140501010801 plugins/jacop_.jar
  199fcd64 (LOCAL_ONLY) 20140604155557 plugins/mcib3d-suite/mcib3d-core.jar
  3b5f97ef (LOCAL_ONLY) 20140604155558 plugins/mcib3d-suite/mcib3d_plugins.jar
Comment 1 Johannes Schindelin 2014-06-20 10:22:23 CDT 
Well, the server was down. All of our servers seemed to reboot, and some of them had trouble to come up all the way. Fixed now, of course.
Comment 2 Curtis Rueden 2014-06-20 10:30:11 CDT 
I filed an issue to improve the behavior when the sites.imagej.net server is down:

   https://github.com/imagej/imagej-updater/issues/31