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Bug 864 - FIJI update warnings and error
FIJI update warnings and error
Status: RESOLVED WORKSFORME
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-07-24 12:32 CDT by Ajeet
Modified: 2015-01-06 15:19 CST
3 users (show)

See Also:
Description Ajeet 2014-07-24 12:32:19 CDT 
Using ImageJ 1.49d, Windows 8.1 64bit. 
Running FIJI after update, I get this error in a command line window. Everything else seems to work though. Repeated multiple times even after manually deleting the updater files in warning, even ran with elevated privileges, able to recreate. Let me know if you need anything more.

Could not remove C:\Users\AJEET_~1\Desktop\Fiji.app/jars/imagej-updater-0.4.3.jar
Could not remove C:\Users\AJEET_~1\Desktop\Fiji.app/jars/CorrectBleach_-2.0.0-SNAPSHOT.jar
Warning: imagej-updater-0.1.0.jar matched multiple versions:
        imagej-updater-0.4.3.jar
        imagej-updater-0.5.0.jar
Picking C:\Users\AJEET_~1\Desktop\Fiji.app\jars\imagej-updater-0.5.0.jar
Warning: imagej-updater-0.1.0.jar matched multiple versions:
        imagej-updater-0.4.3.jar
        imagej-updater-0.5.0.jar
Picking C:\Users\AJEET_~1\Desktop\Fiji.app\jars\imagej-updater-0.5.0.jar
Warning: imagej-updater-0.3.8.jar matched multiple versions:
        imagej-updater-0.4.3.jar
        imagej-updater-0.5.0.jar
Picking C:\Users\AJEET_~1\Desktop\Fiji.app\jars\imagej-updater-0.5.0.jar
log4j:WARN No appenders could be found for logger (org.bushe.swing.event.EventService).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Jul 24, 2014 12:21:15 PM java.util.prefs.WindowsPreferences <init>
WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at root 0x80000002. Windows RegCreateKeyEx(...) returned error code 5.
[ERROR] Skipping unsupported option -port7

Information about your version of Java:

  os.arch => amd64
  os.name => Windows NT (unknown)
  os.version => 6.2
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Users\AJEET_~1\Desktop\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\AJEET_~1\Desktop\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140721162623)
Fiji: http://fiji.sc/update/ (last check:20140724080838)

Files not up-to-date:
  4b9bf879 (LOCAL_ONLY) 20140702125916 jars/loci_tools.jar
Comment 1 Johannes Schindelin 2014-07-24 12:48:27 CDT 
Are you running multiple instances of Fiji?
Comment 2 Ajeet 2014-07-24 12:59:24 CDT 
no other program is open, and only one instance of fiji was running when I received that error
Comment 3 Johannes Schindelin 2014-07-24 14:08:36 CDT 
Hmm, that is funny. Trying to reproduce...
Comment 4 Johannes Schindelin 2014-07-24 14:43:27 CDT 
No luck.

But I think I am not getting the whole picture because when I tried to update, at first the updater told me to restart ImageJ. Which I did. It did not output anything on the console that looks anything like your console output... Then it offered me to update tons of versions and that went fine.

Could you maybe describe the individual steps you took to update?