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Bug 884 - Error in file naming when re-opening files
Error in file naming when re-opening files
Status: RESOLVED DUPLICATE of bug 819
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-08-07 10:26 CDT by Nicolás De Francesco
Modified: 2014-08-07 10:36 CDT
2 users (show)

See Also:
Description Nicolás De Francesco 2014-08-07 10:26:20 CDT 
When a file is opened, closed, and then re-opened, the file name (image title) is not the original, but a sequentially numbered version instead, as if the previous instace of the image remained open.

Example: 
test_file.tiff             -> first time it opens in session
test_file-1.tif          -> second time, after closing previous file
test_file-2.tif          etc.

The sequence continues normally when the several instances of same file are opened simultaneously:

test_file.tiff             --> first time it opens in session
test_file-1.tif          --> second time, after closing previous file
test_file-2.tif          -->a second instance of the same image
test_file-3.tif          -->a new instance, after closing all previous ones

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: UP_TO_DATE

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Users\NEUROF~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\NEUROF~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140802125300)
Fiji: http://fiji.sc/update/ (last check:20140730160634)

Files not up-to-date:
  ca5aa7c6 (LOCAL_ONLY) 20140423125757 macros/BatchMacro.ijm
  db77e621 (LOCAL_ONLY) 20140423123110 macros/nico/Hacer Stitching de carpetas desde txt de config.ijm
  ce5f3117 (LOCAL_ONLY) 20140416140756 macros/nico/Macro para stacks 16bit.ijm
  a9ff6b21 (LOCAL_ONLY) 20140610112554 macros/nico/bajados/ROI_Color_Coder.ijm
  a25bea45 (LOCAL_ONLY) 20140616165048 macros/nico/bajados/corre CLAHE en stack.ijm
  b9b9df3f (LOCAL_ONLY) 20140724122426 macros/nico/balance de blancos en serie.ijm
  8b11372f (LOCAL_ONLY) 20140107110455 macros/nico/balance de blancos.ijm
  bf011c00 (LOCAL_ONLY) 20140509161846 macros/nico/corrige stack desde archivo de normalización.ijm
  2cb4d98d (LOCAL_ONLY) 20140610114732 macros/nico/herram para marcar coloc.ijm
  af28bf7a (LOCAL_ONLY) 20140619121222 macros/nico/manejo de Rois de contorno.ijm
  9b3eb046 (LOCAL_ONLY) 20140619135138 macros/nico/manejo de Rois de puntos.ijm
  a7e500b5 (LOCAL_ONLY) 20140619132132 macros/nico/máximos en stack a ROI manager.ijm
  db9c354b (LOCAL_ONLY) 20140722112603 macros/nico/procesa 16 bits G-R.ijm
  4b4722d2 (LOCAL_ONLY) 20140725121040 macros/nico/reasigna colores para confocal.ijm
  73a0007d (LOCAL_ONLY) 20140423124428 macros/pau y gime/Hacer Stitching de carpetas desde txt de config.ijm
  a9299e4f (LOCAL_ONLY) 20140506121759 macros/pau y gime/macro para compilar stack.ijm
  841b9aff (LOCAL_ONLY) 20140428115651 macros/pau y gime/recortar del fondo a partir de rois.ijm
  826f0856 (LOCAL_ONLY) 20140428115746 macros/pau y gime/selecciona cortes.ijm
  7b73682b (LOCAL_ONLY) 20140428184110 macros/toolsets/Calibracion Nikon.txt
  97b99ffc (LOCAL_ONLY) 20140717194157 macros/victoria/resta 1.25 a serie G-R-B.ijm
  ac2cca2f (MODIFIED) 20140616124151 plugins/3D_Viewer.jar
  897b7d43 (LOCAL_ONLY) 20130816110818 plugins/3D_Viewer.txt
  8d9bdfa0 (LOCAL_ONLY) 20090703152912 plugins/DeconvolutionLab/DeconvolutionLab_.jar
  69498417 (LOCAL_ONLY) 20131118143739 plugins/Diffraction_PSF_3D.class
  c2251096 (LOCAL_ONLY) 20130902121602 plugins/ExtendedDepthField.txt
  15431a4d (LOCAL_ONLY) 20130718155404 plugins/GraphThemes/BasicTheme.txt
  61af823e (LOCAL_ONLY) 20130718155404 plugins/GraphThemes/theme3007994286031749119.txt
  e8692561 (LOCAL_ONLY) 20131206172401 plugins/Iterative_Deconvolve_3D.class
  a1daeb6e (LOCAL_ONLY) 20130718155404 plugins/JournalStyles/Cell.txt
  d0f05180 (LOCAL_ONLY) 20130718155404 plugins/JournalStyles/Development.txt
  e22e44d8 (LOCAL_ONLY) 20130718155404 plugins/JournalStyles/NATUREMETHODS.txt
  2cd40f71 (LOCAL_ONLY) 20130718155404 plugins/JournalStyles/Nature.txt
  b246a0bf (LOCAL_ONLY) 20130718155404 plugins/JournalStyles/PLOSONE.txt
  ee0f3be3 (LOCAL_ONLY) 20130718155404 plugins/JournalStyles/PowerPoint2010.txt
  038c2393 (LOCAL_ONLY) 20060209113336 plugins/MSA_514/Compute.class
  dfde1928 (LOCAL_ONLY) 20060209113336 plugins/MSA_514/MSA_514.class
  554982e8 (LOCAL_ONLY) 20140108130458 plugins/MSA_514/Src/Compute.class
  b800d598 (LOCAL_ONLY) 20140108130458 plugins/MSA_514/Src/MSA_514.class
  ab94c8b9 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/PSF_Generator.class
  62ec886b (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface.jar
  8718fb75 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/Chrono.class
  fef61837 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/GridPanel.class
  6b1b726a (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/GridToolbar.class
  b255fe9d (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/NumericTable.class
  4be07775 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/Settings$DelayListener.class
  d4838c3d (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/Settings$Item.class
  9c863891 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/Settings$Msg.class
  cb41293b (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/Settings.class
  9e65f048 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/SpinnerDouble.class
  d42118fd (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/SpinnerFloat.class
  2717246e (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/SpinnerInteger.class
  b57a2bc6 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/WalkBar$1.class
  4b14796b (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/WalkBar$2.class
  c28a0f12 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/additionaluserinterface/WalkBar.class
  27d4d1e0 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/ij.jar
  acd26aef (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware.jar
  3cd76d7d (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/Access.class
  9a9cb32e (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/Buffer.class
  395c00fb (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/Builder.class
  0f7438c3 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/ByteAccess.class
  e579edc0 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/ByteBuffer.class
  ebb1dc2d (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/BytePointwise.class
  7b28b30c (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/ByteProcess.class
  ce587e92 (LOCAL_ONLY) 20130111103644 plugins/PSF Generator/imageware/ByteSet.class
  0574dd45 (LOCAL_ONLY) 20130111103644 plugins/PSF Generator/imageware/Convolver.class
  79acfac9 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/Display.class
  95459b1b (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/DoubleAccess.class
  48692b95 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/DoubleBuffer.class
  8c8a6e48 (LOCAL_ONLY) 20130111103644 plugins/PSF Generator/imageware/DoublePointwise.class
  6b2fcf30 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/DoubleProcess.class
  48ac81bb (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/DoubleSet.class
  1dabacc7 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/FMath.class
  a4fc668c (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/FloatAccess.class
  2ea81f0b (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/FloatBuffer.class
  245b3c64 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/FloatPointwise.class
  fe8a74c9 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/FloatProcess.class
  25325323 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/FloatSet.class
  d1a7c4a6 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/ImageAccess.class
  9b2918c2 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/ImageWare.class
  405e30f0 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/Pointwise.class
  545fa35a (LOCAL_ONLY) 20130111103644 plugins/PSF Generator/imageware/Process.class
  c141c1c9 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/ShortAccess.class
  d25147df (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/ShortBuffer.class
  0670aa23 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/ShortPointwise.class
  6fd9e0e4 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/imageware/ShortProcess.class
  1d0c8dd1 (LOCAL_ONLY) 20130111103644 plugins/PSF Generator/imageware/ShortSet.class
  62ec886b (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/lib/additionaluserinterface.jar
  27d4d1e0 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/lib/ij.jar
  acd26aef (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/lib/imageware.jar
  64f1de6d (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/DefocussingPSF.class
  4fed42b0 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/GaussianPSF.class
  d0a797f1 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/KoehlerPSF.class
  04ec743a (LOCAL_ONLY) 20130319105628 plugins/PSF Generator/psf/MainDialog.class
  1d14f18d (LOCAL_ONLY) 20130114100524 plugins/PSF Generator/psf/bw/BornWolf.class
  4c2574a5 (LOCAL_ONLY) 20130319105040 plugins/PSF Generator/psf/bw/BornWolfPSF.class
  924391c7 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/bw/BornWolfParameters.class
  29c04702 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/bw/KirchhoffDiffractionSimpson.class
  329c8cd6 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/gl/GibsonLanni.class
  4318eb99 (LOCAL_ONLY) 20130319104850 plugins/PSF Generator/psf/gl/GibsonLanniPSF.class
  5e4e3349 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/gl/GibsonLanniParameters.class
  302f9f75 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/gl/KirchhoffDiffractionRiemann.class
  49f25fe3 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/gl/KirchhoffDiffractionSimpson.class
  a706c3df (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/mgl/KirchhoffDiffractionSimpson.class
  22efd9e0 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/mgl/ModifiedGL.class
  3b2c02f7 (LOCAL_ONLY) 20130319105132 plugins/PSF Generator/psf/mgl/ModifiedGLPSF.class
  c7109bc8 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/mgl/ModifiedGLParameters.class
  a1d811a1 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/rw/KirchhoffDiffractionSimpson.class
  38e18fb7 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/rw/RichardsWolf.class
  2bd3dd3c (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/rw/RichardsWolfPSF.class
  d7a1c929 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/rw/RichardsWolfParameters.class
  9669c2ba (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/tv/KirchhoffDiffractionSimpson.class
  f195450f (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/tv/TorokVarga.class
  d4ce2300 (LOCAL_ONLY) 20130319105208 plugins/PSF Generator/psf/tv/TorokVargaPSF.class
  61d548a2 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/tv/TorokVargaParameters.class
  f7d2d595 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/utils/Bessel.class
  23ce9606 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/utils/FFT.class
  55f41915 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/utils/FourierSpace.class
  98f3d0a6 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/utils/MyTableModel.class
  6e7ac11b (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/utils/PSF.class
  931e821a (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/utils/ParametersFWHM.class
  0cdd20d3 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/utils/SliceParameters.class
  315fac07 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psf/utils/statisticsGUI.class
  8cb41a49 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psfapplet/PSFCanvas.class
  33e45a80 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psfapplet/PSFDemo.class
  7d55b2be (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psfapplet/PSFDisplay.class
  e41bbe9c (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psfapplet/PSFWindow.class
  81e2e0b4 (LOCAL_ONLY) 20130111103646 plugins/PSF Generator/psfapplet/PanelImage.class
  c3e6b56d (LOCAL_ONLY) 20131202130750 plugins/PSFGenerator.txt
  0e8ddb6d (LOCAL_ONLY) 20090412121714 plugins/ParallelIterativeDeconvolution/arpack-combo-0.1.jar
  bada76fb (LOCAL_ONLY) 20090412121714 plugins/ParallelIterativeDeconvolution/licenses/parallel_iterative_deconvolution.LICENSE.txt
  c23f906d (LOCAL_ONLY) 20090412121714 plugins/ParallelIterativeDeconvolution/licenses/parallelcolt.LICENSE.txt
  60508fb7 (LOCAL_ONLY) 20090412121714 plugins/ParallelIterativeDeconvolution/macros/ParallelIterativeDeconvolution2D.txt
  20e21511 (LOCAL_ONLY) 20090412121714 plugins/ParallelIterativeDeconvolution/macros/ParallelIterativeDeconvolution3D.txt
  89cb5823 (LOCAL_ONLY) 20090412121714 plugins/ParallelIterativeDeconvolution/netlib-java-0.9.1.jar
  0459906a (LOCAL_ONLY) 20090412121714 plugins/ParallelIterativeDeconvolution/parallel_iterative_deconvolution-1.9.jar
  85711b53 (LOCAL_ONLY) 20090412121714 plugins/ParallelIterativeDeconvolution/parallelcolt-0.7.2.jar
  8fc126a3 (LOCAL_ONLY) 20090412075628 plugins/ParallelSpectralDeconvolution/licenses/parallel_spectral_deconvolution.LICENSE.txt
  b3b247f9 (LOCAL_ONLY) 20090412075628 plugins/ParallelSpectralDeconvolution/licenses/parallelcolt.LICENSE.txt
  26d68231 (LOCAL_ONLY) 20090412075628 plugins/ParallelSpectralDeconvolution/macros/ParallelSpectralDeconvolution2D.txt
  ccb14fdc (LOCAL_ONLY) 20090412075628 plugins/ParallelSpectralDeconvolution/macros/ParallelSpectralDeconvolution3D.txt
  cf3f0780 (LOCAL_ONLY) 20090412075628 plugins/ParallelSpectralDeconvolution/parallel_spectral_deconvolution-1.9.jar
  7a0272c2 (LOCAL_ONLY) 20131206191004 plugins/Radial_Sweep.class
  be25335b (LOCAL_ONLY) 20140725104715 plugins/ScientiFigPrefs.txt
  4f745d1c (LOCAL_ONLY) 20130718155412 plugins/ScientiFig_.jar
  f693e705 (LOCAL_ONLY) 20130718155404 plugins/changes.txt
  c3ea1568 (LOCAL_ONLY) 20130902115616 plugins/figurej_103.jar
  f817eddb (LOCAL_ONLY) 20130126220448 plugins/ij-dcraw_.jar
  0dfa5070 (LOCAL_ONLY) 20130902115621 plugins/imagescience.jar
  7872d78f (LOCAL_ONLY) 20130718155402 plugins/lib/AbsoluteLayout.jar
  6f3fdc0d (LOCAL_ONLY) 20130718155402 plugins/lib/Icons.jar
  c3cdf2d0 (LOCAL_ONLY) 20130718155402 plugins/lib/REngine.jar
  6ba3fcd5 (LOCAL_ONLY) 20130718155402 plugins/lib/Rserve.jar
  269cc20e (LOCAL_ONLY) 20130718155402 plugins/lib/Rsession.jar
  d8b78f4a (LOCAL_ONLY) 20130718155404 plugins/license.txt
  69795d1f (LOCAL_ONLY) 20131105204024 plugins/mosaic_plugins.jar
Comment 1 Mark Hiner 2014-08-07 10:36:28 CDT 
> as if the previous instace of the image remained open.

This is, in fact, exactly what is happening. This is due to the memory leak reported in #819.

We currently have a fix for these bugs in place, it just needs to be released and uploaded... which you can expect imminently.

*** This bug has been marked as a duplicate of bug 819 ***