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Bug 978 - Mosaic - Enhancement - Naturalization cannot process RGB stack
Mosaic - Enhancement - Naturalization cannot process RGB stack
Status: NEW
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Linux
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-12-20 06:03 CST by Albert Cardona
Modified: 2014-12-20 06:08 CST
1 user (show)

See Also:
Description Albert Cardona 2014-12-20 06:03:25 CST 
Only the first slice is processed, and a dialog appears saying "error, null/<the-ifilename> folder could not be found".

After than a dialog with the naturalization factors (one per channel) opens instead of printing to the log or results table.

Information about your version of Java:

  os.arch => amd64
  os.name => Linux
  os.version => 3.13.0-43-generic
  java.version => 1.8.0_25
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.8.0_25-b17
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 25.25-b02
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.8
  sun.cpu.endian => little
  sun.desktop => gnome
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /home/albert/Programming/fiji-linux64-20091014/Fiji.app/java/linux-amd64/jdk1.8.0_25//jre
  imagej.dir => /home/albert/Programming/fiji-linux64-20091014/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20141219171116)
Fiji: http://fiji.sc/update/ (last check:20141219145224)
FFMPEG: http://fiji.sc/~schindelin/ffmpeg-plugins/ (last check:20130606112449)
MOSAIC ToolSuite: http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/ (last check:20141218114345)

Files not up-to-date:
  1581bc4d (MODIFIED) 20120131124042 Contents/MacOS/ImageJ-macosx
  75db148f (MODIFIED) 20120131124042 Contents/MacOS/ImageJ-tiger
  32a5cb57 (LOCAL_ONLY) 20090910082726 macros/StartupMacros.txt
  dc7fce6b (LOCAL_ONLY) 20111014094119 plugins/Motion_Deblur.jar
  32738eb1 (LOCAL_ONLY) 20120511160900 plugins/SAT-lib-Drosophila-3rd-instar.clj
  3335decb (LOCAL_ONLY) 20101016092738 plugins/T2-NIT.jar
  86a55071 20141117220036 plugins/bigdataviewer-core-1.0.0-SNAPSHOT.jar
  7c95e931 (LOCAL_ONLY) 20140420121925 plugins/test_haskell_splitAt.py
  7f241f66 (LOCAL_ONLY) 20100603001850 plugins/tests/Example_Cursors.class
  a47f6af3 (LOCAL_ONLY) 20130425143259 plugins/tests/crop-file.py
  d3260180 (LOCAL_ONLY) 20090910082729 scripts/Record_Desktop.py
  0ea7f8fc (LOCAL_ONLY) 20090910082729 scripts/Record_Window.py
Comment 1 Albert Cardona 2014-12-20 06:08:24 CST 
More specifically the error days:

"FileSaver"

"An error occurred during writing the file"

"null/first-instar-brain-1_nat.tif" (No such file or directory)

The image in question was the "First instar brain" from the Samples image menu.