the following macro will crash Fiji to desktop in win7-64 every few runs, randomly. I will upload a sample file ["wiggly.tif"]
macro text:

/*macro to register images to median of Z slices per timepoint
 * uses FIJI garbage code to try to correct random major crashes!
 * V.Bindokas, Univ of Chicago, JAN 2015
 */

ti=getTitle();
Stack.getDimensions(width, height, channels, slices, frames);
//waitForUser("ref","select reference slice and then hit OK");

for(z=1;z<=slices; z++){
	selectWindow(ti);
	Stack.setSlice(z);
	Stack.setFrame(1);
	run("Z Project...", "projection=Median");
	run("Unsharp Mask...", "radius=11 mask=0.60");
	//run("Duplicate...", "title=ref");
	rename("ref");
for (i=1; i<=frames; i++){
	selectWindow(ti);
	Stack.setFrame(i);
	run("Duplicate...", "title=wrk");
	// Fine [Very Fine] [Very Coarse] [Super Fine]
	run("bUnwarpJ", "source_image=wrk target_image=ref registration=Mono image_subsample_factor=0 initial_deformation=[Coarse] final_deformation=[Very Fine] divergence_weight=0.7 curl_weight=0 landmark_weight=0 image_weight=0.8 consistency_weight=20 stop_threshold=0.001");
	while(isOpen("Registered Source Image")==false) wait(800);
	selectWindow("wrk");
	close();
	selectWindow("Registered Source Image");
	run("Copy");
	close();
	selectWindow(ti);
	run("Paste");
	run("Collect Garbage");
}
selectWindow("ref");
close();
run("Collect Garbage");
}

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: E:\DEC201~1/java/win64/jdk1.6.0_24//jre
  imagej.dir => E:\DEC201~1

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150122044514)
Fiji: http://fiji.sc/update/ (last check:20150122030708)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20141208015245)
FFMPEG: http://fiji.sc/~schindelin/ffmpeg-plugins/ (last check:20130606102449)
GDSC-SMLM: http://sites.imagej.net/GDSC-SMLM/ (last check:20140918051334)
HDF5: http://sites.imagej.net/Ronneber/ (last check:20140827114014)
Morphology: http://sites.imagej.net/Landini/ (last check:20140723095558)
OpenSPIM: http://openspim.org/update/ (last check:20140630085101)

Files not up-to-date:
  1ad3be0d (LOCAL_ONLY) 20141222042830 jars/jpedalSTD.jar
  6d337b7a (LOCAL_ONLY) 20140730142734 plugins/Accurate_Gaussian_Blur.class
  6e9d50db (LOCAL_ONLY) 20140320051924 plugins/Adjustable_Watershed.class
  12ec0761 (LOCAL_ONLY) 20120224100622 plugins/Align_RGB_planes.class
  0c575fd1 (LOCAL_ONLY) 20141209160514 plugins/BioVoxxel_Plugins.jar
  52ff6766 (LOCAL_ONLY) 20150115075008 plugins/Create_Template.jar
  55de57f2 (LOCAL_ONLY) 20050408121420 plugins/DecCredits$1.class
  66a64476 (LOCAL_ONLY) 20050408121420 plugins/DecCredits.class
  fd4ce3cd (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionFFT.class
  b0398adb (LOCAL_ONLY) 20141028073350 plugins/DeconvolutionLab/DeconvolutionLab_.jar
  8866a3cd (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionSolution.class
  ce989b93 (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionWavelets.class
  13072662 (LOCAL_ONLY) 20050408121420 plugins/Deconvolution_.class
  11326750 (LOCAL_ONLY) 20050408103628 plugins/FFT1D.class
  18f23277 (LOCAL_ONLY) 20050408103628 plugins/FourierSpace.class
  348da731 (LOCAL_ONLY) 20141126044659 plugins/GHT_.jar
  15a0aac2 (LOCAL_ONLY) 20050408150536 plugins/GibsonPSF.class
  52861b7c (LOCAL_ONLY) 20050408150244 plugins/GibsonPSFF.class
  f481dc68 (LOCAL_ONLY) 20120817074900 plugins/Hybrid_2D_Filters.class
  6b2de3e5 (LOCAL_ONLY) 20120817084143 plugins/Hybrid_3D_Filters.class
  e9cb6eb7 (LOCAL_ONLY) 20150115083713 plugins/Image_CorrelationJ_1o.class
  d6bc39b9 (LOCAL_ONLY) 20141023044548 plugins/Jay_Plugins.jar
  04b38ca7 (LOCAL_ONLY) 20141023044548 plugins/Jay_Plugins2.jar
  71ae5c42 (LOCAL_ONLY) 20140509130342 plugins/KalmanOpenStackFilter_.class
  44f1acfa (LOCAL_ONLY) 20121128135145 plugins/Mexican_Hat_Filter.class
  53c5c1ad (LOCAL_ONLY) 20141103073745 plugins/NL_Means_.jar
  4ed208ff (LOCAL_ONLY) 20140929064046 plugins/NanoTrackJ_.jar
  21927175 (LOCAL_ONLY) 20140808090713 plugins/PIV_.jar
  b3b13b1f (LOCAL_ONLY) 20050408150244 plugins/PSFCredits$1.class
  cb99705d (LOCAL_ONLY) 20050408150244 plugins/PSFCredits.class
  de90b917 (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG$1.class
  e33950eb (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG.class
  9f2412ff (LOCAL_ONLY) 20141028082626 plugins/PSF_Generator.jar
  5a3abd78 (LOCAL_ONLY) 20050408150536 plugins/PSF_Gibson_.class
  65b190f7 (LOCAL_ONLY) 20121002063426 plugins/PSF_Simple_.class
  0c89ccf5 (LOCAL_ONLY) 20140507100709 plugins/PoissonNMF_.jar
  12289f6e (LOCAL_ONLY) 20110916093010 plugins/PureDenoise_.jar
  33ca5f87 (LOCAL_ONLY) 20141215122204 plugins/Thunder_STORM.jar
  69b16199 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4.class
  f0990b22 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4Filter.class
  27901023 (LOCAL_ONLY) 20050408152652 plugins/Wavelet_Deconvolution_.class
  71331805 (LOCAL_ONLY) 20140314082430 plugins/jacop_.jar
  9bbfb280 (LOCAL_ONLY) 20140225135257 plugins/octane2_.jar