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Bug 995 - HDF5 import no longer working
HDF5 import no longer working
Status: RESOLVED DUPLICATE of bug 989
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2015-01-27 16:36 CST by Jesse
Modified: 2015-01-27 17:22 CST
2 users (show)

See Also:

Description Jesse 2015-01-27 16:36:09 CST
The import HDF5 file functionality appears to have been lost.  Files that I have successfully open many times over the past several months are no longer being opened.  I do get a log file with the output of:

/time001:DATASET

This corresponds to the first dataset within the file in question.  But, nothing beyond this is giving me any further info.

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Users\aaronj\DOCUME~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\aaronj\DOCUME~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150122054514)
Fiji: http://fiji.sc/update/ (last check:20150127142630)
HDF5: http://sites.imagej.net/Ronneber/ (last check:20140827124014)
MOSAIC ToolSuite: http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/ (last check:20150123093155)

Files not up-to-date:
  1ad3be0d (LOCAL_ONLY) 20140627205826 jars/jpedalSTD.jar
  0309f51d (LOCAL_ONLY) 20140923160542 plugins/OpenSIF_.class
  1d4b1a8e (LOCAL_ONLY) 20140923160803 plugins/Open_SIF.class
Comment 1 Curtis Rueden 2015-01-27 17:22:43 CST
This is a plugin from an external update site (HDF5). You will have to contact the maintainer of that update site (ronneber@informatik.uni-freiburg.de) for assistance.

*** This bug has been marked as a duplicate of bug 989 ***