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Bug 520 - nd2 files not opening
nd2 files not opening
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2012-11-01 13:07 CDT by David Knecht
Modified: 2013-07-07 09:30 CDT
3 users (show)

See Also:
Description David Knecht 2012-11-01 13:07:28 CDT 
Before latest update, I could drag and drop nd2 files onto Fiji and it would recognize and open them. Now it does not.

Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.7.5
  java.version => 1.6.0_37
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_37-b06-434-11M3909
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.12-b01-434
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: UP_TO_DATE

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  ij.dir => /Applications/Fiji.app

Information about the version of each plugin:

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Comment 1 Johannes Schindelin 2012-11-01 16:26:44 CDT 
Any interesting output in the Console? (In Finder, Go>Utilities>Console)
Comment 2 Melissa Linkert 2012-11-01 21:30:14 CDT 
That sounds a bit like Bio-Formats was uninstalled, so you might also try going to "Help > Update Fiji", clicking "Advanced Mode", and making sure that all of the Bio-Formats files are installed.  Searching for "4.4.4.jar" in advanced mode should give you the full list of files.
Comment 3 David Knecht 2012-11-01 21:53:10 CDT 
Sorry for the false alarm.  I tried again and it worked fine.  I think what happened was that Fiji was doing automatic updates at the same time it was trying to open the file so LOCI was probably in the middle of being updated.  Thanks for the help.  Dave