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Bug 489 - Bio format importer broken
Bio format importer broken
Status: RESOLVED DUPLICATE of bug 488
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
: 490
Depends on:
Blocks:
 
Reported: 2012-09-12 21:08 CDT by thomas.julou
Modified: 2012-09-13 15:54 CDT
4 users (show)

See Also:
Description thomas.julou 2012-09-12 21:08:02 CDT 
Hello,

Using the last update of LOCI tools, the bioformat importer is broken in Fiji: the menu is there but is inactive, both in File=>Import and in Plugins=>Loci tools.

Thank you for your help. Best regards,

Thomas Julou




Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.8.1
  java.version => 1.6.0_35
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_35-b10-428-11M3811
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.10-b01-428
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
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Comment 1 Johannes Schindelin 2012-09-12 21:30:49 CDT 
Just a quick hunch: could you uninstall scifio (in the advanced mode of the updater, select "View all files" and type "scifio" into the search box, click on the corresponding line, click on the "Uninstall" button and "Apply changes") and try again?
Comment 2 Melissa Linkert 2012-09-12 21:34:26 CDT 
This is a duplicate of bug #488.  Please see this comment for a workaround:

http://fiji.sc/bugzilla/﷒0﷓

*** This bug has been marked as a duplicate of bug 488 ***
Comment 3 gigi.ga90 2012-09-13 15:54:48 CDT 
*** Bug 490 has been marked as a duplicate of this bug. ***